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STAR Protocols |
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A pipeline for STED super-resolution imaging and Imaris analysis of nanoscale synapse organization in mouse cortical brain slices |
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Molecular Microbiology |
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Super-resolution fluorescence microscopy for investigating bacterial cell biology |
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Journal of Biological Chemistry |
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Effects of specific disease mutations in non-muscle myosin 2A on its structure and function |
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Nucleic Acids Research |
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Biochemical and cellular insights into the Baz2B protein, a non-catalytic subunit of the chromatin remodeling complex |
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Food Hydrocolloids |
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Phase behaviour and structure formation of alginate-gelatin composite gels |
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BMC Biology |
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Expression profiles of the autism-related SHANK proteins in the human brain |
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ACS Omega |
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Selective Tumor Hypoxia Targeting Using M75 Antibody Conjugated Photothermally Active MoOx Nanoparticles |
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Toxins |
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A Colonic Organoid Model Challenged with the Large Toxins of Clostridioides difficile TcdA and TcdB Exhibit Deregulated Tight Junction Proteins |
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Cell Reports |
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Acute reorganization of postsynaptic GABA A receptors reveals the functional impact of molecular nanoarchitecture at inhibitory synapse |
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mBio |
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HTLV-1 biofilm polarization maintained by tetraspanin CD82 is required for efficient viral transmission |
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BMC Biology |
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Agarose spot migration assay to measure the chemoattractant potential of extracellular vesicles: applications in regenerative medicine and cancer metastasis |
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Autophagy |
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ATG9 resides on a unique population of small vesicles in presynaptic nerve terminals |
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bioRxiv |
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Mammalian circadian clock proteins form dynamic interacting microbodies distinct from phase separation |
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bioRxiv |
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The Essential Role of Latrophilin-1 Adhesion GPCR Nanoclusters in Inhibitory Synapses |
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Nature Communications |
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Claudin-23 reshapes epithelial tight junction architecture to regulate barrier function |
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PLOS genetics |
Roca-Umbert, A., et al. |
Human genetic adaptation related to cellular zinc homeostasis |
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Biophysical Journal |
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Fluorophore position of headgroup-labeled Gb3 glycosphingolipids in lipid bilayers |
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Research Square |
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Meiotic recombination dynamics in plants with repeat-based holocentromeres shed light on the primary drivers of crossover patterning |
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Journal of Cell Biology |
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Centrosomal organization of Cep152 provides flexibility in Plk4 and procentriole positioning |
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bioRxiv |
Frantzmann, F., et al. |
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Koestler, S.A., et al. |
Transcriptionally active chromatin loops contain both ‘active’ and ‘inactive’ histone modifications that exhibit exclusivity at the level of nucleosome clusters |
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Cancer Discovery |
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Structural basis of PML/RARA oncoprotein targeting by arsenic unravels a cysteine rheostat controlling PML body assembly and function |
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bioRxiv |
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EWSR1 nuclear organization 1 EWSR1’s visual modalities are defined by its association with nucleic acids and RNA polymerase II |
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Cell Reports Methods |
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Research Square |
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Abnormal Centriolar Biomarker Ratios Correlate with Unexplained Bull Artificial Insemination Subfertility – a Pilot Study |
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bioRxiv |
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A Compact and Effective Photon-Resolved Image Scanning Microscope |
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eLife |
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Journal of Cell Biology |
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Cingulin and paracingulin tether myosins-2 to junctions to mechanoregulate the plasma membrane |
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Angewandte Chemie International Edition |
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Nature Cell Biology |
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SEL1L–HRD1 endoplasmic reticulum-associated degradation controls STING-mediated innate immunity by limiting the size of the activable STING pool |
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The Immune Synapse: Methods and Protocols |
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bioRxiv |
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Meiotic recombination dynamics in plants with repeat-based holocentromeres shed light on the primary drivers of crossover patterning |
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Immediate effects of light on circadian eclosion and locomotor activity depend on distinct sensory input pathways |
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bioRxiv |
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The Drosophila MIC10 orthologue has a propensity to polymerize into cristae-shaping filaments |
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PLoS biology |
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Plasticity of Drosophila germ granules during germ cell development |
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Chemistry‐Methods |
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A Bright Surprise: Live‐Cell Labeling with Negatively Charged Fluorescent Probes based on Disulfonated Rhodamines and HaloTag |
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Nature Cell Biology |
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A lysosome membrane regeneration pathway depends on TBC1D15 and autophagic lysosomal reformation proteins |
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Paracingulin recruits CAMSAP3 to tight junctions and regulates microtubule and polarized epithelial organization |
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bioRxiv |
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Astrocyte-Secreted Neurocan Controls Inhibitory Synapse Formation and Function |
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Biomedicine & Pharmacotherapy |
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Multimodal study of CHI3L1 inhibition and its effect on angiogenesis, migration, immune response and refractive index of cellular structures in glioblastoma |
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International Journal of Molecular Sciences |
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Modelling a Human Blood-Brain Barrier Co-Culture Using an Ultrathin Silicon Nitride Membrane-Based Microfluidic Device |
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Microbiology Spectrum |
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JCI insight |
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EGFR inhibition leads to enhanced desmosome assembly and cardiomyocyte cohesion via ROCK activation |
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Life Science Alliance |
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Applied Sciences |
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Image Scanning Microscopy to Investigate Polycomb Protein Colocalization onto Chromatin |
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Star Protocols |
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Optimized protocol for live-cell analysis of kinetochore fiber maturation in Indian muntjac cells |
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Journal of Cell Science |
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A central CRMP complex essential for invasion in Toxoplasma gondii |
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Ebiomedicine 87 |
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Science Direct |
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Comprehensive maturity of nuclear pore complexes regulates zygotic genome activation |
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Molecular biology of the cell |
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Molecular Psychiatry |
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Communications Biology |
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Nature communications |
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Annals of the New York Academy of Sciences |
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Cells |
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Identifying the Molecular Mechanisms and Types of Cell Death Induced by bio-and pyr-Silica Nanoparticles in Endothelial Cells |
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Cell Reports |
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Cell Reports |
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Augmin-dependent microtubule self-organization drives kinetochore fiber maturation in mammals |
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STAR protocols |
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Neuron |
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Journal of Medicinal Chemistry |
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Stabilization of the RAS: PDE6D Complex Is a Novel Strategy to Inhibit RAS Signaling |
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Cells |
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MPP1 Determines the Mobility of Flotillins and Controls the Confinement of Raft-Associated Molecules |
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Frontiers in Bioengineering and Biotechnology |
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Poly-L-Lysine and human plasmatic fibronectin films as proactive coatings to improve implants biointegration |
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Science advances |
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Calcineurin and huntingtin form a calcium-sensing machinery that directs neurotrophic signals to the nucleus |
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Biochimica et Biophysica Acta (BBA)-Biomembranes |
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Giant plasma membrane vesicles to study plasma membrane structure and dynamics |
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Elife |
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Defining the interactome of the human mitochondrial ribosome identifies SMIM4 and TMEM223 as respiratory chain assembly factors |
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Pseudomonas aeruginosa rhamnolipid micelles deliver toxic metabolites and antibiotics into Staphylococcus aureus |
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Biophysical Reports |
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Long-term STED imaging of membrane packing and dynamics by exchangeable polarity-sensitive dyes |
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The Journal of physiology |
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VGLUT3‐p. A211V variant fuses stereocilia bundles and elongates synaptic ribbons |
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Nano Research |
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Cell reports |
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The TFAM-to-mtDNA ratio defines inner-cellular nucleoid populations with distinct activity levels |
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Traffic |
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Journal of the American Chemical Society |
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Photoactivatable Fluorescent Dyes with Hydrophilic Caging Groups and Their Use in Multicolor Nanoscopy |
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Food Hydrocolloids |
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Super-resolution microscopy to visualize and quantify protein microstructural organization in food materials and its relation to rheology: Egg white proteins |
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Biochemical and Biophysical Research Communications |
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Super-resolved 3D-STED microscopy identifies a layer-specific increase in excitatory synapses in the hippocampal CA1 region of Neuroligin-3 KO mice |
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Nature Communications |
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Mapping protein interactions in the active TOM-TIM23 supercomplex |
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Cells |
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Nano-Infrared Imaging of Primary Neurons |
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Molecular Systems Biology |
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RNA polymerase II clusters form in line with surface condensation on regulatory chromatin |
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iScience |
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Focal accumulation of aromaticity at the CDRH3 loop mitigates 4E10 polyreactivity without altering its HIV neutralization profile |
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Development |
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New mouse models for high resolution and live imaging of planar cell polarity proteins in vivo |
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Life Science Alliance |
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An extended DNA-free intranuclear compartment organizes centrosome microtubules in malaria parasites |
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Microscopy Research and Technique |
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Nucleic Acids Research |
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Conservation and divergence of meiotic DNA double strand break forming mechanisms in Arabidopsis thaliana |
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Cell Host & Microbe |
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HIV-1 matrix-tRNA complex structure reveals basis for host control of Gag localization |
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Angewandte Chemie |
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Cell‐Permeable Nanobodies Allow Dual‐Color Super‐Resolution Microscopy in Untransfected Living Cells |
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Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons |
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Glia |
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Epigenetic control of region‐specific transcriptional programs in mouse cerebellar and cortical astrocytes |
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Journal of Cell Biology |
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TRIM37 prevents formation of condensate-organized ectopic spindle poles to ensure mitotic fidelity |
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Cancer research |
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Cytoplasmic localization of prostate-specific membrane antigen inhibitors may confer advantages for targeted cancer therapies |
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Nature Computational Science |
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Proceedings of the National Academy of Sciences |
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The synaptonemal complex imposes crossover interference and heterochiasmy in Arabidopsis |
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Nature communications |
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Viruses |
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Super-Resolution STED Microscopy-Based Mobility Studies of the Viral Env Protein at HIV-1 Assembly Sites of Fully Infected T-Cells |
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Scientific reports |
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The origin of the expressed retrotransposed gene ACTBL2 and its influence on human melanoma cells’ motility and focal adhesion formation |
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The Plant Cell |
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ATM controls meiotic DNA double-strand break formation and recombination and affects synaptonemal complex organization in plants |
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Journal of Cell Biology |
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Superresolution characterization of core centriole architecture |
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IScience |
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Alteration in synaptic nanoscale organization dictates amyloidogenic processing in Alzheimer’s disease |
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Journal of extracellular vesicles |
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Dissemination of Mycobacterium tuberculosis is associated to a SIGLEC1 null variant that limits antigen exchange via trafficking extracellular vesicles |
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Blood advances |
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Platelets function as an acute viral reservoir during HIV-1 infection by harboring virus and T-cell complex formation |
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Neurotoxicity Research |
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Cell reports |
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Affinity for the interface underpins potency of antibodies operating in membrane environments |
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The EMBO journal |
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ACS photonics |
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Journal of Biophotonics |
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STED nanoscopy of KK114‐stained pathogenic bacteria |
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Nature cell biology |
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Dynamin regulates the dynamics and mechanical strength of the actin cytoskeleton as a multifilament actin-bundling protein |
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JCI insight |
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Stabilization of desmoglein-2 binding rescues arrhythmia in arrhythmogenic cardiomyopathy |
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Journal of Biological Chemistry |
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The cortical actin network regulates avidity-dependent binding of hyaluronan by the lymphatic vessel endothelial receptor LYVE-1 |
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Helicobacter pylori Avoids the Critical Activation of NLRP3 Inflammasome-Mediated Production of Oncogenic Mature IL-1β in Human Immune Cells |
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Scientific reports |
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Anatomy of a viral entry platform differentially functionalized by integrins α3 and α6 |
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Journal of Cell Biology |
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α-Tubulin detyrosination impairs mitotic error correction by suppressing MCAK centromeric activity |
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Optics express |
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Pixel hopping enables fast STED nanoscopy at low light dose |
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EMBO reports |
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Peroxisomal fission is modulated by the mitochondrial Rho‐GTPases, Miro1 and Miro2 |
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Proceedings of the National Academy of Sciences |
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Resolving titin’s lifecycle and the spatial organization of protein turnover in mouse cardiomyocytes |
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Current Biology |
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Meiotic kinetochores fragment into multiple lobes upon cohesin loss in aging eggs |
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MBio |
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Analysis of CA content and CPSF6 dependence of early HIV-1 replication complexes in SupT1-R5 cells |
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Science advances |
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HIV-1 Gag specifically restricts PI (4, 5) P2 and cholesterol mobility in living cells creating a nanodomain platform for virus assembly |
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Scientific reports |
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Live-cell STED nanoscopy of mitochondrial cristae |
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Nature communications |
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IP3 receptor isoforms differently regulate ER-mitochondrial contacts and local calcium transfer |
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Journal of Cell Biology |
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Gulp1 controls Eph/ephrin trogocytosis and is important for cell rearrangements during development |
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Journal of Physics D: Applied Physics |
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Correlative STED super-resolution light and electron microscopy on resin sections |
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Nature communications |
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Viruses |
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IFITM3 clusters on virus containing endosomes and lysosomes early in the influenza A infection of human airway epithelial cells |
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Nature microbiology |
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Anti-Siglec-1 antibodies block Ebola viral uptake and decrease cytoplasmic viral entry |
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Nature communications |
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The K219T-Lamin mutation induces conduction defects through epigenetic inhibition of SCN5A in human cardiac laminopathy |
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Proceedings of the National Academy of Sciences |
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Optics express |
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HIV-1 nuclear import in macrophages is regulated by CPSF6-capsid interactions at the nuclear pore complex |
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Nature communications |
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Molecular recognition of the native HIV-1 MPER revealed by STED microscopy of single virions |
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PLoS pathogens |
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Visualization of translocons in Yersinia type III protein secretion machines during host cell infection |
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Science signaling |
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ORAI1, stromal interaction molecules 1/2, and ryanodine receptor type 1 shape sub-second Ca2+ microdomains upon T cell activation |
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Nature methods |
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Nucleic acids research |
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Developmental cell |
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Traffic |
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The large GTPase Mx1 binds Kif5B for cargo transport along microtubules |
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Cell |
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ACS nano |
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Statistical analysis of scanning fluorescence correlation spectroscopy data differentiates free from hindered diffusion |
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Biochimica et Biophysica Acta (BBA)-Biomembranes |
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Nanoscale spatiotemporal diffusion modes measured by simultaneous confocal and stimulated emission depletion nanoscopy imaging |
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Super-resolution imaging reveals the sub-diffraction phenotype of Zellweger Syndrome ghosts and wild-type peroxisomes |
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Three dimensional live-cell STED microscopy at increased depth using a water immersion objective |
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2018 |
Biochimica Et Biophysica Acta (BBA)-Molecular Cell Research |
Chumová, J., et al. |
γ-Tubulin has a conserved intrinsic property of self-polymerization into double stranded filaments and fibrillar networks |
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ACS nano |
Gao, M., et al. |
Expansion stimulated emission depletion microscopy (ExSTED) |
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Nature cell biology |
Stoldt, S., et al. |
Spatial orchestration of mitochondrial translation and OXPHOS complex assembly |
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2018 |
Journal of Cell Biology |
Walther, N., et al. |
A quantitative map of human Condensins provides new insights into mitotic chromosome architecture |
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2018 |
Molecular and Cellular Neuroscience |
Katidou, M., et al. |
G-protein coupled receptors Mc4r and Drd1a can serve as surrogate odorant receptors in mouse olfactory sensory neurons |
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2018 |
Journal of virology |
Rujas, E., et al. |
Functional optimization of broadly neutralizing HIV-1 antibody 10E8 by promotion of membrane interactions |
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2018 |
The Journal of Physical Chemistry B |
Vandenberk, N., et al. |
Evaluation of Blue and Far-Red Dye Pairs in Single-Molecule Forster Resonance Energy Transfer Experiments |
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Bio-protocol |
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Terminal deoxynucleotidyl transferase mediated production of labeled probes for single-molecule FISH or RNA capture |
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Nature communications |
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Lymphocyte-specific protein 1 regulates mechanosensory oscillation of podosomes and actin isoform-based actomyosin symmetry breaking |
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Science signaling |
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RhoB Controls the Rab11-mediated Recycling and Surface Reappearance of LFA-1 in Migrating T Lymphocytes |
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Scientific reports |
Mitronova, G. Y., et al. |
High-affinity functional fluorescent ligands for human β-adrenoceptors |
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Biophysical journal |
Sezgin, E., et al. |
Polarity-sensitive probes for superresolution stimulated emission depletion microscopy |
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Nature communications |
Chojnacki, J., et al. |
Envelope glycoprotein mobility on HIV-1 particles depends on the virus maturation state |
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Photonics |
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Exploring the potential of airyscan microscopy for live cell imaging |
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Elife |
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Synchronized HIV assembly by tunable PIP2 changes reveals PIP2 requirement for stable Gag anchoring |
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Scientific reports |
Winter, F. R., et al. |
Multicolour nanoscopy of fixed and living cells with a single STED beam and hyperspectral detection |
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Molecular biology of the cell |
Schneider, F., et al. |
Diffusion of lipids and GPI-anchored proteins in actin-free plasma membrane vesicles measured by STED-FCS |
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Cell reports |
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Ultrastructural characterization of Zika virus replication factories |
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Proceedings of the National Academy of Sciences |
Göttfert, F., et al. |
Strong signal increase in STED fluorescence microscopy by imaging regions of subdiffraction extent |
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Journal of Biological Chemistry |
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Super-resolution microscopy reveals compartmentalization of peroxisomal membrane proteins |
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Chemistry |
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“Reduced” coumarin dyes with an O-phosphorylated 2, 2-dimethyl-4-(hydroxymethyl)-1, 2, 3, 4-tetrahydroquinoline fragment: Synthesis, spectra, and STED microscopy |
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Optics express |
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isoSTED nanoscopy with intrinsic beam alignment |
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European Journal of Organic Chemistry |
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Functionalization of the meso-phenyl ring of rhodamine dyes through SNAr with sulfur nucleophiles: Synthesis, biophysical characterizations, and comprehensive NMR analysis |
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Nature communications |
Honigmann, A., et al. |
Scanning STED-FCS reveals spatiotemporal heterogeneity of lipid interaction in the plasma membrane of living cells |
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Nature communications |
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Multi-protein assemblies underlie the mesoscale organization of the plasma membrane |
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Progress In Electromagnetics Research |
Görlitz, F., et al. |
A STED microscope designed for routine biomedical applications |
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Elife |
Honigmann, A., et al. |
A lipid bound actin meshwork organizes liquid phase separation in model membranes |
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Chemistry |
Kolmakov, K., et al. |
Polar red-emitting rhodamine dyes with reactive groups: synthesis, photophysical properties, and two-color STED nanoscopy applications |
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Biophysical journal |
Göttfert, F., et al. |
Coaligned dual-channel STED nanoscopy and molecular diffusion analysis at 20 nm resolution |
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Nature structural & molecular biology |
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Phosphatidylinositol 4, 5-bisphosphate clusters act as molecular beacons for vesicle recruitment |
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Bioconjugate chemistry |
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Carborhodol: a new hybrid fluorophore obtained by combination of fluorescein and carbopyronine dye cores |
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Optical Nanoscopy |
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Novel red fluorophores with superior performance in STED microscopy |
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Chemistry |
Kolmakov, K., et al. |
Red-emitting rhodamines with hydroxylated, sulfonated, and phosphorylated dye residues and their use in fluorescence nanoscopy |
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Biochimica et Biophysica Acta (BBA)-Biomembranes |
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Partitioning, diffusion, and ligand binding of raft lipid analogs in model and cellular plasma membranes |
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Faraday Discussions |
Honigmann, A., et al. |
STED microscopy detects and quantifies liquid phase separation in lipid membranes using a new far-red emitting fluorescent phosphoglycerolipid analogue |
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