Rapid depletion and super-resolution microscopy reveal dual roles of SRSF5 in coordinating nuclear speckle–paraspeckle crosstalk during cellular stress

Authors:

Ellen Kazumi Okuda, Laurell Fridolin Kessler, Benjamin Arnold, Ricarda J. Riegger, Maria Clara Hernández Cañás, Ewelina Zebrowska, Cem Bakisoglu, Mara Rudigier, Christine Krost, Helder Y. Nagasse, Jan Keiten-Schmitz, Stefan Müller, David Stanek, Dorothee Dormann, Kathi Zarnack, Mike Heilemann, Michaela Müller-McNicoll

Keywords:

Nuclear speckles; paraspeckles; nuclear condensates, SRSF5; paraspeckle maturation;

Abstract:

Nuclear speckles (NS) and paraspeckles (PS) are adjacent yet distinct nuclear condensates that undergo stress-induced reorganization. Here, we identify a dual role for the splicing factor SRSF5 in coordinating the crosstalk between both condensates. Super-resolution imaging shows that SRSF5, while enriched in NS, also overlaps with the shell of a subset of PS. SRSF5 binds purine-rich sequences at the 5 end of NEAT1_2 promoting its alignment to PS shells and the formation of large PS cluster during stress. We propose that SRSF5 binding occurs transiently during PS maturation and must later be removed from NEAT1_2 by nuclear helicases. Inhibition of this remodeling by rocaglamide A, which locks helicases onto purine-rich RNA leads to the aberrant fusion of PS and NS, which can be partially rescued by acute SRSF5 depletion. Surprisingly, while short-term SRSF5 loss impairs PS formation, prolonged depletion activates a feedback loop involving intron retention and premature polyadenylation of TARDBP, reduction of TDP-43 levels and NEAT1_2 isoform switching, ultimately restoring PS clusters. Our findings reveal that SRSF5 serves both architectural and regulatory roles in PS biogenesis and that helicase-mediated remodeling is essential to maintain PS identity and function under stress. These insights uncover fundamental principles of nuclear body dynamics.

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